Organism Naming Conventions
The fully specified name (FSN) of organism concepts names are officially recognized Linnaean taxonomic classes and include a designation of rank. They include but are not limited to Phylum, Order, Suborder, Class, Family, Genus, and subspecies. The official names of organisms may include abbreviations such as “subg.“ (Kingdom Plantae) and “subsp.” and “subgen.” (Domain Bacteria).but when requesting changes you should expand word and not include an abbreviation.
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The
SNOMED International Editorial Guide
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includes naming conventions that apply to all SNOMED
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CT concepts. However, additional principles apply to the naming of concepts in the Organism hierarchy, and these differ from the general naming conventions, so it’s important to
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be familiar with the detailed rules found in
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the Organism Naming Conventions
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section of the SNOMED International Editorial Guide.
- When considering a name, the first task is to consider if whether the concept represents an organism or taxonomic group of organisms that have a scientific name in the Linnaean taxonomy e.g. Escherichia coli (organism) or
Genus Escherichia coli - Genus Escherichia (organism) or
Family Enterbacteriaceae - Family Enterobacteriaceae (organism).
- The
non- fully specified name (FSN) of organism concept names are officially recognized Linnaean taxonomic classes and include a designation of rank including but not limited to Phylum, Order, Suborder, Class, Family, Genus, and subspecies.
- The official names of organisms may include abbreviations such as “subg.“ (Kingdom Plantae) and “subsp.” and “subgen.” (Domain Bacteria), but abbreviations are prohibited in FSNs and so should be spelled out fully.
- Non-Linnaean categories of organisms are
reflected in SNOMED CT concepts which identifies - identified with FSNs that contain a staining property, a physiological characteristic (that the organism requires oxygen) and a description of the organism’s morphology (that it is rod-shaped). These are among the properties used in a laboratory to determine the identity of a bacterial organism in a specimen,
culture- culture, or isolate. e.
g Gram- g Gram-negative aerobic rod (organism)
or Deoxyribonucleic - or Deoxyribonucleic acid virus (organism)
The Editorial guide specifies the source listed above to be considered when determining an organism's current name- Accepted references outlined in the Microbiology section of these guidelines provide the appropriate current name, taxonomic definition and synonyms of the organism concept required.